adata-query

🔎 AnnDataQuery

Fetch data matrices from AnnData and format as np.ndarray or torch.Tensor, on any device.

Installation

Using UV (Recommended)

# Install the package
uv add adata-query

# Or for development
uv pip install -e .

Using pip

pip install adata-query

Development Installation

# Clone the repository
git clone https://github.com/mvinyard/AnnDataQuery.git
cd AnnDataQuery

# Install with UV (recommended)
uv sync --dev

# Or with pip
pip install -e .

Get started

Example: notebook