aind-mri-targeting

AIND MRI Targeting

Tools to plan and execute MRI-guided targeting experiments

Installation

If you choose to clone the repository, you can install the package by running the following command from the root directory of the repository:

pip install .

Otherwise, you can use pip:

pip install aind-mri-targeting

To install notebooks, run:

install_notebooks [path]

To develop the code, run:

uv sync

Development

Please test your changes using the full linting and testing suite:

./scripts/run_linters_and_checks.sh -c

Or run individual commands:

uv run --frozen ruff format          # Code formatting
uv run --frozen ruff check           # Linting

uv run --frozen interrogate -v src   # Documentation coverage
uv run --frozen codespell --check-filenames  # Spell checking
uv run --frozen pytest --cov aind_mri_targeting # Tests with coverage

License

This project is licensed under the MIT License - see the LICENSE file for details.