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0.7.1

PyPI

aind-hcr-data-loader

Generated from aind-library-template

Published9 Apr 2026
Direct dependencies13
Transitive dependenciesNot calculated

README

Version 0.7.1 documentation

aind-hcr-data-loader

License Code Style semantic-release: angular Interrogate Coverage Python

Change log

See CHANGELOG.md for full details.

VersionDateSummary
v0.7.004/02/2026New codeocean_utils module for attaching dataset-catalog records to capsules/pipelines
v0.6.003/18/2026New pairwise/cell-typing/spot-filter modules; major HCRDataset and filters.py additions
v0.5.102/23/2026metrics_base_path, spot_filters.py, comprehensive ROI filtering pipeline
v0.4.010/16/2025Tile overlap, ROI filtering, linear unmixing, neuroglancer links, saveable_plot
v0.3.808/11/2025Cell info loading improvements, metrics paths, error handling

Installation

To use the software, in the root directory, run

pip install -e .

To develop the code, run

pip install -e .[dev]

Contributing

Linters and testing

There are several libraries used to run linters, check documentation, and run tests.

  • Please test your changes using the coverage library, which will run the tests and log a coverage report:
coverage run -m unittest discover && coverage report
  • Use interrogate to check that modules, methods, etc. have been documented thoroughly:
interrogate .
  • Use flake8 to check that code is up to standards (no unused imports, etc.):
flake8 .
  • Use black to automatically format the code into PEP standards:
black .
  • Use isort to automatically sort import statements:
isort .

Pull requests

For internal members, please create a branch. For external members, please fork the repository and open a pull request from the fork. We'll primarily use Angular style for commit messages. Roughly, they should follow the pattern:

<type>(<scope>): <short summary>

where scope (optional) describes the packages affected by the code changes and type (mandatory) is one of:

  • build: Changes that affect build tools or external dependencies (example scopes: pyproject.toml, setup.py)
  • ci: Changes to our CI configuration files and scripts (examples: .github/workflows/ci.yml)
  • docs: Documentation only changes
  • feat: A new feature
  • fix: A bugfix
  • perf: A code change that improves performance
  • refactor: A code change that neither fixes a bug nor adds a feature
  • test: Adding missing tests or correcting existing tests

Downloads & popularity

Awaiting observations

No metric observations yet

Download counts and popularity will appear here as the collector receives them.

Declared dependencies 13

Native requirements
13 direct targetsNot calculated transitive count
Package / targetRequirementRelationship
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Distribution files

2 collected
aind_hcr_data_loader-0.7.1-py3-none-any.whl

bdist_wheel · 1,213.87 KB · Python py3

Source file
aind_hcr_data_loader-0.7.1.tar.gz

sdist · 1,256.66 KB · Python source

Source file

Metadata history

Meaningful changes
Current collected state Current

Observed since 21 Oct, 11:29 UTC

No superseded metadata states collected. Unchanged observations do not create new revisions.

Record identity

package_version:622661e1e9b1bdfb1130ee0695d64aa35164f4b9f22cd7c729f29655889f5363

Other collected versions

View all collected versions →