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0.1.0

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alpaca

ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algebraic approach to incorporate sample based filtering into the calling. This allows to intuitively control the FDR for arbitrary filtering scenarios.

bioinformaticsvariant-calling
Published11 Jun 2015
Direct dependencies8
Transitive dependenciesNot calculated

Downloads & popularity

6,171downloads
Cumulative counter · observed snapshots21 Oct 2026
6.2K6K5.9K
2026-10-21: 6,171 · observed 2026-10-21T10:24:26.0879890Z
21 Oct21 Oct

crates · 1 observations shown. Missing days are unknown. Counter changes are not daily download totals.

View observed values
Date / source periodValueObserved at
2026-10-216,1712026-10-21T10:24:26.0879890Z

Declared dependencies 8

Native requirements
8 direct targetsNot calculated transitive count
Package / targetRequirementRelationship
argparse
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bio
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>= 0.3.7runtime
itertools
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log
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peg
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rust-htslib
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>= 0.4.0runtime
simple_parallel
Environment
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tempdir
Environment
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Distribution files

0 collected

No distribution files are present in the collected metadata.

Checksums from source
{
  "sha256": "a3cb05b82243b7428c6f00a83e4651e9670d15d70612d2cc957e26f6e0d23d8d"
}

Repository

PENDING
johanneskoester/alpaca

Shared repository data · GitHub

License detected in repository
Not collected

Metadata history

Meaningful changes
Current collected state Current

Observed since 21 Oct, 10:24 UTC

No superseded metadata states collected. Unchanged observations do not create new revisions.

Record identity

package_version:7b5e28203531ec0616db554181ab5f47c72b4ef44cd28dffc083a5f01b9239b5

Other collected versions

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