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0.0.2a0

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abacat

abacat - A BActerial genome Curation and Annotation Toolkit

Published4 Apr 2020

Direct dependencies6

Transitive dependenciesNot calculated

README

Version 0.0.2a0 documentation

Abacat (pronounced 'ABBA-cat') is a toolkit for working with bacterial whole genome sequencing (WGS) data. It provides Python objects to represent elements which are common to WGS analysis workflows, such as coding sequence (CDS) files, containing genes or proteins, alignment methods, or statistics about your sequences.

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Declared dependencies 6

Native requirements

6 direct targetsNot calculated transitive count

Package / target	Requirement	Relationship
biopython Environment { "extras": "", "marker": null, "requires_python": ">=3.6", "evaluation": "NOT_EVALUATED" }	`biopython`	runtime
pandas Environment { "extras": "", "marker": null, "requires_python": ">=3.6", "evaluation": "NOT_EVALUATED" }	`pandas`	runtime
argparse Environment { "extras": "", "marker": null, "requires_python": ">=3.6", "evaluation": "NOT_EVALUATED" }	`argparse`	runtime
matplotlib Environment { "extras": "", "marker": null, "requires_python": ">=3.6", "evaluation": "NOT_EVALUATED" }	`matplotlib`	runtime
scipy Environment { "extras": "", "marker": null, "requires_python": ">=3.6", "evaluation": "NOT_EVALUATED" }	`scipy`	runtime
pytest Environment { "extras": "", "marker": null, "requires_python": ">=3.6", "evaluation": "NOT_EVALUATED" }	`pytest`	runtime