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0.1.0

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aabatlas

Client for the antibodyome-atlas, a curated catalog of autoantibody profiling datasets and papers

arrayexpressautoantibodybioinformaticsgeoproteomics
Published12 Sept 2026
Direct dependencies3
Transitive dependenciesNot calculated

README

Version 0.1.0 documentation

aabatlas

Python client for the antibodyome-atlas, a curated catalog of autoantibody profiling datasets and papers. See schema/README.md in the atlas repo for the data model. Mirrors the R client, AAbAtlas.

Install

Not yet on PyPI. Until then, install from GitHub:

pip install "git+https://github.com/ahcm088/antibodyome-atlas.git#subdirectory=python-package"

Usage

import aabatlas

# browse
ds = aabatlas.list_datasets()
ds[(ds["record_type"] == "DATASET") & (ds["total_sample_n"] > 100)][["atlas_id", "title", "total_sample_n"]]

# one record, with its publication and platforms resolved
rec = aabatlas.get_dataset("AAB-000004")
rec["title"]
rec["publication"]["citation"]

# citation ready to paste into a manuscript
aabatlas.get_citation("AAB-000004")

# download the underlying file
aabatlas.download("AAB-000004")

By default every function reads the latest curated data (ref="main"). Pin a release tag for reproducibility in a publication:

aabatlas.list_datasets(ref="v1.0.0")

Downloads & popularity

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Declared dependencies 3

Native requirements
3 direct targetsNot calculated transitive count
Package / targetRequirementRelationship
pandas
Environment
{
  "extras": "",
  "marker": null,
  "requires_python": ">=3.9",
  "evaluation": "NOT_EVALUATED"
}
pandas>=1.5runtime
requests
Environment
{
  "extras": "",
  "marker": null,
  "requires_python": ">=3.9",
  "evaluation": "NOT_EVALUATED"
}
requests>=2.31runtime
pytest
Environment
{
  "extras": "",
  "marker": "extra == \"test\"",
  "requires_python": ">=3.9",
  "evaluation": "NOT_EVALUATED"
}
pytest>=7.0; extra == "test"runtime

Distribution files

2 collected
aabatlas-0.1.0-py3-none-any.whl

bdist_wheel · 6.51 KB · Python py3

Source file
aabatlas-0.1.0.tar.gz

sdist · 5.21 KB · Python source

Source file

Repository

PENDING
ahcm088/antibodyome-atlas

Shared repository data · GitHub

License detected in repository
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Current collected state Current

Observed since 20 Oct, 16:48 UTC

No superseded metadata states collected. Unchanged observations do not create new revisions.

Record identity

package_version:bb8959151dc600295bfaf1005be3a3c335526df2f1b59e57be7d6bf12be32afc

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