PkgFoundry
Catalog PyPI
Back to packageRELEASE DETAILS

0.5

PyPI

adataviz

A python package to visualize adata

adatavisualization
Published11 Apr 2026
Direct dependencies13
Transitive dependenciesNot calculated

README

Version 0.5 documentation

adataviz

Functions and tools to visualize adata

Installation

  1. Install using pip:
pip install adataviz

#upgrade from older version
pip install --upgrade adataviz
  1. Install the developmental version directly from github:
pip install git+https://github.com/DingWB/adataviz
# reinstall
pip uninstall -y adataviz && pip install git+https://github.com/DingWB/adataviz

OR

git clone https://github.com/DingWB/adataviz
cd adataviz
python setup.py install

Command Line Tools

Aggregrate single-cell RNA data to pseudobulk adata

# merge single cells raw counts to psuedobulk (sum up raw counts) and run normalization (logCPM or logTPM)
adataviz tool scrna2pseudobulk  HMBA.Group.downsample_1500.h5ad --groupby="Subclass" --downsample=2000 --use_raw=True --n_jobs 16 --normalization CPM -s ~/Projects/BICAN/adata/HMBA_v2/Pseudobulk.Subclass.h5ad

# stat pseudobulk: calculate min,q25, q50, q75, max, mean and std
adataviz tool stat_pseudobulk  HMBA.Group.downsample_1500.h5ad --groupby="Subclass" --downsample=2000 --use_raw=False -m RNA --n_jobs 16 -s ~/Projects/BICAN/adata/HMBA_v2/Pseudobulk.Subclass.stats.h5ad

Downloads & popularity

Awaiting observations

No metric observations yet

Download counts and popularity will appear here as the collector receives them.

Declared dependencies 13

Native requirements
13 direct targetsNot calculated transitive count
Package / targetRequirementRelationship
matplotlib
Environment
{
  "extras": "",
  "marker": null,
  "requires_python": ">=3.0",
  "evaluation": "NOT_EVALUATED"
}
matplotlibruntime
numpy
Environment
{
  "extras": "",
  "marker": null,
  "requires_python": ">=3.0",
  "evaluation": "NOT_EVALUATED"
}
numpyruntime
pandas
Environment
{
  "extras": "",
  "marker": null,
  "requires_python": ">=3.0",
  "evaluation": "NOT_EVALUATED"
}
pandas>=1.3.5runtime
scipy
Environment
{
  "extras": "",
  "marker": null,
  "requires_python": ">=3.0",
  "evaluation": "NOT_EVALUATED"
}
scipyruntime
loguru
Environment
{
  "extras": "",
  "marker": null,
  "requires_python": ">=3.0",
  "evaluation": "NOT_EVALUATED"
}
logururuntime
anndata
Environment
{
  "extras": "",
  "marker": null,
  "requires_python": ">=3.0",
  "evaluation": "NOT_EVALUATED"
}
anndataruntime
fire
Environment
{
  "extras": "",
  "marker": null,
  "requires_python": ">=3.0",
  "evaluation": "NOT_EVALUATED"
}
fireruntime
scanpy
Environment
{
  "extras": "",
  "marker": null,
  "requires_python": ">=3.0",
  "evaluation": "NOT_EVALUATED"
}
scanpyruntime
PyComplexHeatmap
Environment
{
  "extras": "",
  "marker": null,
  "requires_python": ">=3.0",
  "evaluation": "NOT_EVALUATED"
}
PyComplexHeatmapruntime
seaborn
Environment
{
  "extras": "",
  "marker": null,
  "requires_python": ">=3.0",
  "evaluation": "NOT_EVALUATED"
}
seabornruntime
adjustText
Environment
{
  "extras": "",
  "marker": null,
  "requires_python": ">=3.0",
  "evaluation": "NOT_EVALUATED"
}
adjustTextruntime
plotly
Environment
{
  "extras": "",
  "marker": null,
  "requires_python": ">=3.0",
  "evaluation": "NOT_EVALUATED"
}
plotlyruntime
ipywidgets
Environment
{
  "extras": "",
  "marker": null,
  "requires_python": ">=3.0",
  "evaluation": "NOT_EVALUATED"
}
ipywidgetsruntime

Distribution files

2 collected
adataviz-0.5-py3-none-any.whl

bdist_wheel · 67.59 KB · Python py3

Source file
adataviz-0.5.tar.gz

sdist · 70.48 KB · Python source

Source file

Repository

PENDING
dingwb/adataviz

Shared repository data · GitHub

License detected in repository
Not collected

Metadata history

Meaningful changes
Current collected state Current

Observed since 20 Oct, 19:10 UTC

No superseded metadata states collected. Unchanged observations do not create new revisions.

Record identity

package_version:cf9f53d0a07b666bfc27b1d8a0bd7bb6a2409bd33a6e419e8e85ebea1fc9a058

Other collected versions

View all collected versions →