add-labels-to-fcs

add-labels-to-fcs

This repository includes code for adding data labels to FCS files as additional data channels. It also adds labels a grid that can be gated in standard flow cytometry software. The package is in active development, and more features will be added here.

Installation

pip install add-labels-to-fcs

Basic Usage

To add data columns (unmodified) to an FCS file using command line interface:

add-labels-to-fcs file.fcs labels.xlsx new_file.fcs

To add data columns in a grid to facilitate gating using command line interface:

add-labels-as-grid-to-fcs file.fcs labels.xlsx new_file.fcs

To use library functions in your own python scripts, import the following:

from add-labels-to-fcs import add_labels