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0.4.0

PyPI

add-labels-to-fcs

Package for adding columns of data to FCS files as additional channels

Published19 Oct 2024

Direct dependencies4

Transitive dependenciesNot calculated

README

Version 0.4.0 documentation

add-labels-to-fcs

This repository includes code for adding data labels to FCS files as additional data channels. It also adds labels a grid that can be gated in standard flow cytometry software. The package is in active development, and more features will be added here.

Installation

pip install add-labels-to-fcs

Basic Usage

To add data columns (unmodified) to an FCS file using command line interface:

add-labels-to-fcs file.fcs labels.xlsx new_file.fcs

To add data columns in a grid to facilitate gating using command line interface:

add-labels-as-grid-to-fcs file.fcs labels.xlsx new_file.fcs

To use library functions in your own python scripts, import the following:

from add-labels-to-fcs import add_labels

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Declared dependencies 4

Native requirements

4 direct targetsNot calculated transitive count

Package / target	Requirement	Relationship
pandas Environment { "extras": "", "marker": null, "requires_python": "", "evaluation": "NOT_EVALUATED" }	`pandas>=2.2`	runtime
openpyxl Environment { "extras": "", "marker": null, "requires_python": "", "evaluation": "NOT_EVALUATED" }	`openpyxl>=3.1`	runtime
numpy Environment { "extras": "", "marker": null, "requires_python": "", "evaluation": "NOT_EVALUATED" }	`numpy>=1.26`	runtime
flowkit Environment { "extras": "", "marker": null, "requires_python": "", "evaluation": "NOT_EVALUATED" }	`flowkit>=1.1`	runtime